software
¡Esta es una revisión vieja del documento!
- hpc_aplicaciones.list
**Amber** Assisted Model Building with energy refinement. Used for biological and molecular simulations. **ATLAS** Provides optimal software for lineal algebra. **BLAS** Routines for operations with vector and matrices. **EasyBuild** **GAMESS** General Atomic and Molecular Electronic Structure System, a general ab initio quantum chemistry package. **gamos5** Geant4-based medicine-oriented-simulations. gamos5 simulates of the passage of particles through matter.Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science. **Gaussian** Provides state-of-the-art capabilities for structure modeling. **gcc, g++, gfortran** Compilers and its libraries. **gnuplot** Gnuplot is a command-line driven graphing utility used to visualize mathematical functions and data interactively. **GSL** GNU Scientific Library. **Lapack** Routines for solving lineal equations, eigenvalue problems. **Ligplot** Program for automatically ploting protein-ligand interactions. **Matlab** A programming language that allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces and interfacing with programs written in other languages. **MPICH** High performance and widely portable implementation of MPI. **Octave** High-level interpreter language for numerical computations. It provides capabilities for numerical solution of lineal and nonlineal problems, and graphic capabilities for data manipulation and visualization. **OpenMPI** Open source Message Passing Interface (MPI) implementation. **pgapack** Parallel Genetic Algorithm Library **python** A widely used high-level, general-purpose, interpreted, dynamic programming language. **R** Free software environment for statistical computing and graphics. **Scilab** Opensource software for numerical computations. **Weka** Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization. **MrBayes** MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters. **BEAST** BEAST2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. **RAxML** RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. It can also be used for post- analyses of sets of phylogenetic trees, analyses of alignments and, evolutionary placement of short reads.
software.1488006317.txt.gz · Última modificación: 2022/11/02 17:58 (editor externo)