software
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software [2017/02/25 07:05] – Ernesto Eduardo Diaz Conde | software [2022/11/02 17:58] (actual) – editor externo 127.0.0.1 | ||
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+ | ^Amber^|Assisted Model Building with energy refinement. Used for biological and molecular simulations.| | ||
+ | ^ATLAS^|Provides optimal software for lineal algebra. | | ||
+ | ^BLAS^| Routines for operations with vector and matrices.| | ||
+ | ^EasyBuild^|Framework for installing software| | ||
+ | ^GAMESS^|General Atomic and Molecular Electronic Structure System, a general ab initio quantum chemistry package.| | ||
+ | ^gamos5^|Geant4-based medicine-oriented-simulations. gamos5 simulates of the passage of particles through matter.Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.| | ||
+ | ^Gaussian^|Provides state-of-the-art capabilities for structure modeling.| | ||
+ | ^gcc, g++, gfortran^|Compilers and its libraries.| | ||
+ | ^gnuplot^|Gnuplot is a command-line driven graphing utility used to visualize mathematical functions and data interactively.| | ||
+ | ^GSL^|GNU | ||
+ | ^Lapack^|Routines for solving lineal equations, eigenvalue problems.| | ||
+ | ^Ligplot^|Program for automatically ploting protein-ligand interactions.| | ||
+ | ^Matlab^|A programming language that allows matrix manipulations, | ||
+ | ^MPICH^|High performance and widely portable implementation of MPI.| | ||
+ | ^Octave^|High-level interpreter language for numerical computations. It provides capabilities for numerical solution of lineal and nonlineal problems, and graphic capabilities for data manipulation and visualization.| | ||
+ | ^OpenMPI^|Open source Message Passing Interface (MPI) implementation.| | ||
+ | ^pgapack^|Parallel Genetic Algorithm Library| | ||
+ | ^python^|A widely used high-level, general-purpose, | ||
+ | ^R^|Free software environment for statistical computing and graphics.| | ||
+ | ^Scilab^|Opensource software for numerical computations.| | ||
+ | ^Weka^|Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, | ||
+ | ^Bioinformatics Software^|| | ||
+ | ^MrBayes^|MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters.| | ||
+ | ^BEAST^|BEAST2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.| | ||
+ | ^RAxML^|RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. It can also be used for post- analyses of sets of phylogenetic trees, analyses of alignments and, evolutionary placement of short reads.| | ||
- | <file list hpc_aplicaciones.list> | ||
- | **Amber** Assisted Model Building with energy refinement. Used for biological and molecular simulations. | ||
- | **ATLAS** Provides optimal software for lineal algebra. | ||
- | **BLAS** Routines for operations with vector and matrices. | ||
- | **EasyBuild** | ||
- | **GAMESS** General Atomic and Molecular Electronic Structure System, a general ab initio quantum chemistry package. | ||
- | **gamos5** Geant4-based medicine-oriented-simulations. gamos5 simulates of the passage of particles through matter.Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science. | ||
- | **Gaussian** Provides state-of-the-art capabilities for structure modeling. | ||
- | **gcc, g++, gfortran** Compilers and its libraries. | ||
- | **gnuplot** Gnuplot is a command-line driven graphing utility used to visualize mathematical functions and data interactively. | ||
- | **GSL** GNU Scientific Library. | ||
- | **Lapack** Routines for solving lineal equations, eigenvalue problems. | ||
- | **Ligplot** Program for automatically ploting protein-ligand interactions. | ||
- | **Matlab** A programming language that allows matrix manipulations, | ||
- | **MPICH** High performance and widely portable implementation of MPI. | ||
- | **Octave** High-level interpreter language for numerical computations. It provides capabilities for numerical solution of lineal and nonlineal problems, and graphic capabilities for data manipulation and visualization. | ||
- | **OpenMPI** Open source Message Passing Interface (MPI) implementation. | ||
- | **pgapack** Parallel Genetic Algorithm Library | ||
- | **python** A widely used high-level, general-purpose, | ||
- | **R** Free software environment for statistical computing and graphics. | ||
- | **Scilab** Opensource software for numerical computations. | ||
- | **Weka** Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, | ||
- | **MrBayes** MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters. | ||
- | **BEAST** BEAST2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. | ||
- | **RAxML** RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. It can also be used for post- analyses of sets of phylogenetic trees, analyses of alignments and, evolutionary placement of short reads. | ||
- | </ | ||
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software.1488006317.txt.gz · Última modificación: 2022/11/02 17:58 (editor externo)