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^Amber^|Assisted Model Building with energy refinement. Used for biological and molecular simulations.|
^ATLAS^|Provides optimal software for lineal algebra. |
^BLAS^| Routines for operations with vector and matrices.|
^EasyBuild^|Framework for installing software|
^GAMESS^|General Atomic and Molecular Electronic Structure System, a general ab initio quantum chemistry package.|
^gamos5^|Geant4-based medicine-oriented-simulations. gamos5 simulates of the passage of particles through matter.Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.|
^Gaussian^|Provides state-of-the-art capabilities for structure modeling.|
^gcc, g++, gfortran^|Compilers and its libraries.|
^gnuplot^|Gnuplot is a command-line driven graphing utility used to visualize mathematical functions and data interactively.|
^GSL^|GNU  Scientific Library. 
^Lapack^|Routines for solving lineal equations, eigenvalue problems.|
^Ligplot^|Program for automatically ploting protein-ligand interactions.|
^Matlab^|A programming language that allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces and interfacing with programs written in other languages.|
^MPICH^|High performance and widely portable implementation of MPI.|
^Octave^|High-level interpreter language for numerical computations. It provides capabilities for numerical solution of lineal and nonlineal problems, and graphic capabilities for data manipulation and visualization.| 
^OpenMPI^|Open source Message Passing Interface (MPI) implementation.|
^pgapack^|Parallel Genetic Algorithm Library|
^python^|A widely used high-level, general-purpose, interpreted, dynamic programming language.|
^R^|Free software environment for statistical computing and graphics.|
^Scilab^|Opensource software for numerical computations.|
^Weka^|Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code. Weka contains tools for data pre-processing, classification, regression, clustering, association rules, and visualization.| 
^Bioinformatics Software^||
^MrBayes^|MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters.|
^BEAST^|BEAST2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.|
^RAxML^|RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. It can also be used for post- analyses of sets of phylogenetic trees, analyses of alignments and, evolutionary placement of short reads.|